・東京大学
東京大学
The University of Tokyo
大学院農学生命科学研究科
Graduate School of Agricultural and Life Sciences
応用生命化学専攻
Department of Applied Biological Chemistry
食品生物構造学研究室
Laboratory of Food Biotechnology and Structural Biology

・ライフサイエンス辞書
LIFE SCIENCE DICTIONARY

・文献検索
PubMed
Bookshelf
GACoS-Gateway to Academic Contents System

・統合データベース
TogoDB

・ゲノムネットデータベース
DBGET Search
LinkDB: database of link information
KEGG – Table of Contents

・創薬等支援技術基盤プラットフォームにて開発に加わったデータベースおよびツール
REFOLDdb-a tool for the optimization of protein refolding, referring to published methods employed in the refolding of recombinant proteins
VaProS-a new data cloud for structural life science and is the core technology to lead the collaboration among fields in structural biology and the whole life sciences

・タンパク質配列解析用データベースおよびツール
ExPASy-Bioinformatics Resource Portal
UniProtKB-a comprehensive resource for protein sequence and annotation data
Translate-a tool which allows the translation of a nucleotide (DNA/RNA) sequence to a protein sequence
ProtParam-a tool which allows the computation of various physical and chemical parameters for a given protein
SignalP-predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms
TargetP-predicts the subcellular location of eukaryotic proteins
Phobius-a combined transmembrane topology and signal peptide predictor
SOSUI-classification and secondary structure prediction of membrane proteins
TMHMM-prediction of transmembrane helices in proteins
PDBePISA-an interactive tool for the exploration of macromolecular interfaces
BLAST@ExPASy-finds regions of local similarity between sequences
BLAST@NCBI-finds regions of local similarity between sequences
ClustalO-a new multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences
Multalin-multiple sequence alignment with hierarchical clustering
T-Coffee-a collection of tools for computing, evaluating and manipulating multiple alignments of DNA, RNA, protein sequences and structures

・タンパク質立体構造データベース
PDB (RCSB)
PDBj
PDBe

・実験マニュアル
蛋白質科学会アーカイブ
SPring-8　日本語　English
Photon Factory　日本語　English
Universal V1 Puck　SPring-8でもPFでも利用可能（16個/トレイ）

・分子間相互作用解析サーバー
PDBePISA

・立体構造類似タンパク質検索サーバー
Dali server

・分子構造閲覧用ソフトウェア
PyMOL
UCSF CHIMERA

・立体構造解析用ソフトウェア
CCP4
Phenix
CCPN

・ホモロジーモデリング用ソフトウェア
Modeller

・ドッキングシミュレーション用ソフトウェア
AutoDock
AutoDock Vina